| Handler: |
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Short name, or handle as supplied by NCBI |
| Name: |
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| Tel: |
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| Email: |
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| Lab: |
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| Institution: |
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| PubMed ID: |
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PubMed unique identifier. Not obligatory. |
| Title: |
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Title of article. |
| Authors: |
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Author name, format: Name,I.I.; Name2,I.I.; Name3,I.I. |
| Journal: |
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Journal name |
| Volume: |
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Volume number |
| Pages: |
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Page, format: 123-9 |
| Years: |
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Year of publication. |
| Status: |
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Status field. (1=unpublished, 2=submitted, 3=in press, 4=published) |
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| Method ID: |
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The local identifier used to refer to a method for assaying SNPs that
may be supplied by a submitter |
| Method Class: |
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General class of method. |
| Sequenced both strands: |
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Sequenced both strands? |
| Template Type: |
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Was the template DNA used in the assay derived from a clone or from a
diploid genomic DNA extraction? |
| Independent PCR amplifications tested: |
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Independent PCR amplifications tested? |
| Independent clones tested: |
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Independent clones tested? |
| Method Comments: |
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This is multiple lines of free text to describe Method, however, the
line breaks will be preserved and if the submitters use the format
Example: PCR reactions were performed on genomic
DNA and the products analysed by
DHPLC and sequencing
PARAMETER:
Template: 50 ng genomic DNA
Primer: each 100ng
dNTPs: each 0.2 mM
PCR Buffer: 5 ul (10X), Mg 2+ 1.5 mM, Taq Polymerase: 1.25units/ul
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| Population ID: |
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The local identifier used to refer to a population of individuals that
was either used to define a SNP assay or upon which a SNP assay was applied.
Note that some population strings will be predefined, or "globally" defined.
These may be used by more than one submitter. To remove ambiguity, populations
will always be used as <handle>|<population id> with the handle
for the globally defined populations being 'NCBI'. |
| Population Class: |
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central asia: Samples from Russia and satellite Republics, Nations bordering
Indian Ocean between East Asia and Persian Gulf regions.
central/south africa: Nations south of Equator,
Madagascar & neighboring
Island Nations.
central/south america: Samples from Mainland Central and South America,
Island Nations of western Atlantic, Gulf of Mexico and Eastern Pacific.
east asia: Samples from Eastern and South Eastern Mainland
Asia, Northern Pacific Island Nations.
europe: Samples from Europe north and west of Caucasus
Mountains, Scandinavia, Atlantic Islands.
multi-national: samples that were designed to maximize
measures of heterogeneity or sample human diversity in a global fashion.
Examples OEFNER|GLOBAL and
CEPH repository.
north america: All samples north of Tropic of Cancer.
This would include defined samples of U.S. Caucasians, African Americans
and Hispanics and
NCBI|NIHPDR.
north/east africa & middle east: samples collected
from North Africa (including Sahara desert), East Africa (south to Equator),
Levant, Persian
Gulf.
pacific: Samples from Australia, New Zealand, Central
and Southern Pacific Islands, Southeast Asian Peninsular/Island Nations.
unknown: Samples with unknown geographic provenience that
are not global in nature.
west africa: Sub-Saharan Nations bordering Atlantic north
of Congo River, and Central/Southern Atlantic Island Nations.
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| Population Comments: |
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This is multiple lines of free text, however, the line breaks will
be preserved and if the submitters use the format.
4 human individuals DNA from thefollowing populations:
1: EUROPEAN
2: AMERICAN_INDIAN
3: JAPANESE
4: AFRICAN
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| Batch: |
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The submitter will name each batch for
ease of communication. This name will
only be unique for a particular submitter. |
| Moltype: |
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Since this is so important and could vary by method, it goes with the
header.
If you would like to submit a mixture of molecular types, please split your submission, so
each contains SNPs assayed using a single moltype.
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| Method: |
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The local identifier used to refer to a method for assaying SNPs that
may be supplied by a submitter. |
| Sample Size: |
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The number of distinct chromosomes examined in thec ourse of discovery
of the variation.
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| Organism: |
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as on NCBI taxonomy
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| Citation: |
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To match the title of an entry in a
publication section of this submitter.
This field may repeat.If omitted and a single citation is includedi n the batch,
the parser will associate the
citation with the assay. |
| Population ID: |
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The local identifier used to refer to a population of individuals that
was either used to define a SNP assay or upon which a SNP assay was applied.
Note that some population strings will be predefined, or "globally" defined.
These may be used by more than one submitter. To remove ambiguity, populations
will always be used as <handle>|<population id> with the handle
for the globally defined populations being 'NCBI'. |
| Comment: |
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Free text for public, will be shown with each SNP
assay in this batch.
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| Format (tab-seperated): |
Marker |
Accession |
Sample Size |
5'Flank |
Allele |
3'Flank |
Comment |
| Fill in template and copy-n-paste to the box below. |
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